RetrogeneDB ID: | retro_ggor_542 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 10:116443182..116443535(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000110958 | ||
Ensembl ID: | ENSGGOG00000027957 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.34 % |
Parental protein coverage: | 75. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSIL-CCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDW |
L.GSD.FKHL..I.LFHCIDPND.KHKR.DRSIL..CL.KG..GQSWPRLTK.RAKLNWLSVD.N.WKDW | |
Retrocopy | LPGSDHFKHLYGINLFHCIDPNDFKHKRMDRSIL<VCLQKGKWGQSWPRLTKQRAKLNWLSVDSNHWKDW |
Parental | EDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDEKMPDLE |
EDDSDE.MS.FD.FSEMMN.MGG.EDVDL...DG.DD.SQDSDDEKMPDLE | |
Retrocopy | EDDSDEAMSDFDYFSEMMNHMGGEEDVDL--ADGGDDHSQDSDDEKMPDLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 31 .60 RPM |
SRP007412_cerebellum | 0 .00 RPM | 24 .11 RPM |
SRP007412_heart | 0 .00 RPM | 4 .16 RPM |
SRP007412_kidney | 0 .00 RPM | 35 .04 RPM |
SRP007412_liver | 0 .00 RPM | 23 .90 RPM |
SRP007412_testis | 0 .00 RPM | 68 .89 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_618 |
Pan troglodytes | retro_ptro_452 |
Pongo abelii | retro_pabe_553 |
Macaca mulatta | retro_mmul_2421 |