RetrogeneDB ID: | retro_pabe_5 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:139743158..139743629(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000001173 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTGES3 | ||
Ensembl ID: | ENSPPYG00000004669 | ||
Aliases: | None | ||
Description: | Prostaglandin E synthase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5NVM4] |
Percent Identity: | 93.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTD |
MQPASAKWY.RRDYVFIEFCVED.KDVNVNFEKSKL.FSCLGGSDN...LNEIDLFHCID.NDSKHKRTD | |
Retrocopy | MQPASAKWYNRRDYVFIEFCVEDRKDVNVNFEKSKLAFSCLGGSDN---LNEIDLFHCIDTNDSKHKRTD |
Parental | RSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPE |
RS.LCCLRKGESGQSW.RLTKERAKLNWLSVDFNNW.DWEDDSDEDMSNFDRFSEMMNNMGGDEDVDL.E | |
Retrocopy | RSTLCCLRKGESGQSWSRLTKERAKLNWLSVDFNNWNDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLLE |
Parental | VDGADDDSQDSDDEKMPDLE |
VDGADDDSQDSDDEKMPDLE | |
Retrocopy | VDGADDDSQDSDDEKMPDLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 1 .44 RPM | 70 .99 RPM |
SRP007412_cerebellum | 1 .46 RPM | 95 .70 RPM |
SRP007412_heart | 0 .81 RPM | 56 .14 RPM |
SRP007412_kidney | 1 .79 RPM | 80 .38 RPM |
SRP007412_liver | 1 .68 RPM | 66 .71 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_417 |
Pan troglodytes | retro_ptro_319 |