RetrogeneDB ID: | retro_dnov_2088 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_4661:125037..125299(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTGES3 | ||
Ensembl ID: | ENSDNOG00000011310 | ||
Aliases: | None | ||
Description: | prostaglandin E synthase 3 (cytosolic) [Source:HGNC Symbol;Acc:16049] |
Percent Identity: | 82.42 % |
Parental protein coverage: | 55.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SILCCLRKGESGQSWPRLTKE-RAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPE |
..LCCL..GESGQSWPRLTK..RAKLNWLS.DFN..KDWEDDSDEDMSNFD.FSE.M.NMG.DEDVD.PE | |
Retrocopy | AFLCCL*NGESGQSWPRLTKK<RAKLNWLSGDFNR-KDWEDDSDEDMSNFDCFSEIMDNMGDDEDVDMPE |
Parental | VDGADDDSQDSDDE-KMPDLE |
VDG.DDDSQDSDDE.KMPDLE | |
Retrocopy | VDGGDDDSQDSDDE<KMPDLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 48 .42 RPM |
SRP012922_cerebellum | 0 .00 RPM | 46 .19 RPM |
SRP012922_heart | 0 .00 RPM | 20 .65 RPM |
SRP012922_kidney | 0 .00 RPM | 32 .86 RPM |
SRP012922_liver | 0 .15 RPM | 37 .31 RPM |
SRP012922_lung | 0 .00 RPM | 56 .66 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 21 .12 RPM |
SRP012922_spleen | 0 .00 RPM | 56 .43 RPM |