RetrogeneDB ID: | retro_btau_1766 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:110194525..110195005(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTGES3 | ||
Ensembl ID: | ENSBTAG00000017967 | ||
Aliases: | PTGES3, CPGES | ||
Description: | Prostaglandin E synthase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q3ZBF7] |
Percent Identity: | 83.12 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTD |
.QPAS.KWY..R.YVFIEFCVEDS.DVNVNFE.SKLTFSCLGG.D.FKHLNEIDL.HCIDPN.SKHKRTD | |
Retrocopy | IQPASPKWYNQRNYVFIEFCVEDSQDVNVNFENSKLTFSCLGGIDHFKHLNEIDLLHCIDPNNSKHKRTD |
Parental | RSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPE |
RSIL.CL.KGESGQSWPRLTKERAKLNW.SV.F.NWKDWE.DS..DMSNF.RFSEMMNNMGGDE.VDLPE | |
Retrocopy | RSILYCL*KGESGQSWPRLTKERAKLNWFSVNFSNWKDWERDSVADMSNFNRFSEMMNNMGGDENVDLPE |
Parental | VDGADDDSQDSDDEKMPDLE |
V.GA.DDSQDSD....PDLE | |
Retrocopy | VHGAGDDSQDSDXXXXPDLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 347 .50 RPM |
ERP005899_muscle | 0 .00 RPM | 190 .04 RPM |
SRP017611_brain | 0 .00 RPM | 185 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 178 .76 RPM |
SRP017611_liver | 0 .00 RPM | 135 .54 RPM |
SRP030211_testis | 0 .01 RPM | 161 .24 RPM |