RetrogeneDB ID: | retro_ptro_319 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 1:89901231..89901711(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTGES3 | ||
Ensembl ID: | ENSPTRG00000005108 | ||
Aliases: | None | ||
Description: | Pan troglodytes prostaglandin E synthase 3 (cytosolic) (PTGES3), mRNA. [Source:RefSeq mRNA;Acc:NM_001246402] |
Percent Identity: | 96.88 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTD |
MQPASAKWYD.R.YVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCID.NDSKHKRTD | |
Retrocopy | MQPASAKWYDQRHYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDTNDSKHKRTD |
Parental | RSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPE |
RSILCCLRKGESGQSWP.LTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEM.NNMGGDEDVDLPE | |
Retrocopy | RSILCCLRKGESGQSWPKLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMTNNMGGDEDVDLPE |
Parental | VDGADDDSQDSDDEKMPDLE |
VDGADDDSQDSDDEKMPDLE | |
Retrocopy | VDGADDDSQDSDDEKMPDLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .07 RPM | 63 .33 RPM |
SRP007412_cerebellum | 0 .07 RPM | 20 .86 RPM |
SRP007412_heart | 0 .09 RPM | 21 .66 RPM |
SRP007412_kidney | 0 .42 RPM | 37 .19 RPM |
SRP007412_liver | 0 .26 RPM | 18 .53 RPM |
SRP007412_testis | 0 .11 RPM | 60 .60 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_417 |
Pongo abelii | retro_pabe_5 |