RetrogeneDB ID: | retro_pabe_2010 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 2a:86349719..86350188(-) | ||
Located in intron of: | ENSPPYG00000012589 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTGES3 | ||
Ensembl ID: | ENSPPYG00000004669 | ||
Aliases: | None | ||
Description: | Prostaglandin E synthase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5NVM4] |
Percent Identity: | 84.91 % |
Parental protein coverage: | 98.75 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MQPASAKWYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRT- |
.QPASAKWYDRRDYVF..FCVEDSKDVNVNFEKSKLTFS.L.GSD..K.LNE.DLFH.IDPNDSKH.... | |
Retrocopy | VQPASAKWYDRRDYVFT*FCVEDSKDVNVNFEKSKLTFSFLRGSD--KYLNEVDLFHSIDPNDSKHXXX> |
Parental | DRSILCCLRKGESGQSWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLP |
DRSI.CCL.KGESGQSWPRLTK.RAKLNWLSVDFNNWKDWEDDSDED.SN.D.FSEMMNNMGGD.D.D.P | |
Retrocopy | DRSIVCCL*KGESGQSWPRLTKGRAKLNWLSVDFNNWKDWEDDSDEDRSNSDHFSEMMNNMGGDKDADSP |
Parental | EVDGADDDSQDSDDEKMPD |
EVDGA.DDSQDSDDEKMPD | |
Retrocopy | EVDGAGDDSQDSDDEKMPD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .39 RPM | 70 .99 RPM |
SRP007412_cerebellum | 0 .12 RPM | 95 .70 RPM |
SRP007412_heart | 0 .15 RPM | 56 .14 RPM |
SRP007412_kidney | 0 .10 RPM | 80 .38 RPM |
SRP007412_liver | 0 .28 RPM | 66 .71 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2084 |
Pan troglodytes | retro_ptro_1533 |
Gorilla gorilla | retro_ggor_111 |
Macaca mulatta | retro_mmul_978 |