RetrogeneDB ID: | retro_pabe_2579 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4:176468190..176468628(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTGES3 | ||
Ensembl ID: | ENSPPYG00000004669 | ||
Aliases: | None | ||
Description: | Prostaglandin E synthase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5NVM4] |
Percent Identity: | 90.41 % |
Parental protein coverage: | 91.25 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGESGQ |
VF.EFC.ED.KDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLF..IDPNDSKHKR.DRSILCCLRKGESGQ | |
Retrocopy | VFTEFCIEDNKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFYSIDPNDSKHKRMDRSILCCLRKGESGQ |
Parental | SWPRLTKERAKLNWLSVDFNNWKDWEDDSDEDMSNFDRFSEMMNNMGGDEDVDLPEVDGADDDSQDSDDE |
SWPRLTKERAKLNWLSVDFN..KDWED.SDED.SNFD.FSEMMNN.GGDEDVDLPEVD.ADDDSQDSDDE | |
Retrocopy | SWPRLTKERAKLNWLSVDFNH*KDWEDGSDEDRSNFDCFSEMMNNIGGDEDVDLPEVDEADDDSQDSDDE |
Parental | KMPDLE |
.MPDLE | |
Retrocopy | NMPDLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 70 .99 RPM |
SRP007412_cerebellum | 0 .00 RPM | 95 .70 RPM |
SRP007412_heart | 0 .00 RPM | 56 .14 RPM |
SRP007412_kidney | 0 .00 RPM | 80 .38 RPM |
SRP007412_liver | 0 .03 RPM | 66 .71 RPM |