RetrogeneDB ID: | retro_dnov_629 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_70:87954..88232(-) | ||
Located in intron of: | ENSDNOG00000019984 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSDNOG00000008341 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 62.63 % |
Parental protein coverage: | 73.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MVRMNVLADALKSI-NNAEKRGKRQVLIRPC-SKVIVRF-LTVMMKHGYIGEFEIIDDHRAGKIVVNLTG |
MV..N....A.KSI..NAEKRG...VLIR.C.S.VI..F.L.VM.KHGY....EI.DDHRAGKI.VN.T. | |
Retrocopy | MVHVNGPGNAPKSIVSNAEKRGTHHVLIRLC>SQVII*F<LIVMVKHGYTDKSEITDDHRAGKIFVNFTY |
Parental | RLNKCGVISPRFD-VQLKDLEKWQNNLLP |
..NKCGVIS.RF..VQL...EKWQNN.LP | |
Retrocopy | KSNKCGVISSRFE<VQL---EKWQNNMLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 2 .53 RPM | 146 .24 RPM |
SRP012922_cerebellum | 0 .27 RPM | 57 .32 RPM |
SRP012922_heart | 0 .23 RPM | 78 .19 RPM |
SRP012922_kidney | 0 .27 RPM | 165 .10 RPM |
SRP012922_liver | 3 .25 RPM | 76 .32 RPM |
SRP012922_lung | 0 .46 RPM | 224 .05 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 94 .16 RPM |
SRP012922_spleen | 0 .69 RPM | 232 .70 RPM |