RetrogeneDB ID: | retro_ocun_1067 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 2:118781089..118781363(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSOCUG00000000179 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 84.78 % |
Parental protein coverage: | 75.21 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MVRMNVLADALKSINNAEKRGKR-QVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRL |
MV.MN.LADAL.SIN.AEKRG.R...L.RP.SKVI.RFLTVMMK.GYIGEFEIIDD.RAGKIVVN.TGRL | |
Retrocopy | MVHMNILADALNSINSAEKRG*R>RFLTRPYSKVIIRFLTVMMKYGYIGEFEIIDDNRAGKIVVNHTGRL |
Parental | NKCGVISPRFDVQLKDLEKWQN |
NKCGVISPRFDVQLKDLEKWQN | |
Retrocopy | NKCGVISPRFDVQLKDLEKWQN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 93 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 242 .24 RPM |
SRP017611_liver | 0 .00 RPM | 47 .71 RPM |