RetrogeneDB ID: | retro_cpor_1031 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_4:18268720..18268997(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSCPOG00000021695 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.84 % |
Parental protein coverage: | 71.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LTVMMKHGYIGEFEIIDDHRAGK-IVVNLTGRLNKCGVISPRFDVQL-KDLEKWQNNLLPSRQFGFIVLT |
..VMM.H.YI.EFEIID..RA.K.IVVNLTGRLN.C..ISPRFDVQL.KDLEKWQNNLLPS.QF..IVLT | |
Retrocopy | VSVMMQHSYIVEFEIIDNPRAEK<IVVNLTGRLNRCSMISPRFDVQL<KDLEKWQNNLLPSCQFSCIVLT |
Parental | TSAGIMDHEEARRKHTGGKILGFFF |
TSAGIMDH.EA..KHTG.K.LG.FF | |
Retrocopy | TSAGIMDHKEAQ*KHTGEKVLGLFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 59 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 116 .52 RPM |
SRP017611_liver | 0 .00 RPM | 81 .96 RPM |
SRP040447_lung | 0 .00 RPM | 209 .71 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 193 .63 RPM |