RetrogeneDB ID: | retro_ocun_1343 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 7:7357054..7357378(-) | ||
Located in intron of: | ENSOCUG00000003406 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000001231 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSOCUG00000000179 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 98.15 % |
Parental protein coverage: | 83.08 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNN |
R..LIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNN | |
Retrocopy | RFFLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNN |
Parental | LLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF |
LLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF | |
Retrocopy | LLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .72 RPM | 93 .49 RPM |
SRP017611_kidney | 1 .32 RPM | 242 .24 RPM |
SRP017611_liver | 0 .62 RPM | 47 .71 RPM |