RetrogeneDB ID: | retro_itri_498 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393296.1:3505653..3505989(+) | ||
Located in intron of: | ENSSTOG00000006847 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSSTOG00000025222 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 64.6 % |
Parental protein coverage: | 86.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | EKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLE |
..RG..QVL...C...I..FLTV.MK.GYIGEFEIID.H.AGK.VVNL.GRLN.C..IS.RFDV..K.L. | |
Retrocopy | KQRGECQVLTGLCARIILGFLTVIMKPGYIGEFEIIDGHGAGKVVVNLMGRLNRCEMISCRFDVLFKNLV |
Parental | KWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF |
KWQN.LL.SRQ.G.IVL.T.AGIM.H.EAR...TGG...GFFF | |
Retrocopy | KWQNSLLLSRQLGSIVL-TPAGIMGHKEAR*RYTGGTSPGFFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |