RetrogeneDB ID:

retro_ggor_1599

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:22:15250083..15250377(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS15A
Ensembl ID:ENSGGOG00000026299
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1599
GTCGTTGTGTGGTTTCTAACTGTGGTGATGAAGCATAGTTACACTGGTGAAGTTGAAGTCATTGATTACCACAGAGCTAG
GAAAACTGCTGTGAACCTCACAGGCAGGTTAAACAAGTGTGGAGTAATCAGCCCCAGATTTGATGTGCAACTCAAAAATC
TAGAAAAATGGCAGAATAATCTGCTCCCATCCTGCCAGTTGGGTTTCATTGCACTCACAACCTCAGCTGGCATCATGGAT
CACAAAGAAGCAAGACGAAAACACACAGGAGGTAAAATCCTGGAATTCTTTTTC

ORF - retro_ggor_1599 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.65 %
Parental protein coverage: 75.38 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFI
V.V.FLTV.MKH.Y.GE.E.ID.HRA.K..VNLTGRLNKCGVISPRFDVQLK.LEKWQNNLLPS.Q.GFI
RetrocopyVVVWFLTVVMKHSYTGEVEVIDYHRARKTAVNLTGRLNKCGVISPRFDVQLKNLEKWQNNLLPSCQLGFI
ParentalVLTTSAGIMDHEEARRKHTGGKILGFFF
.LTTSAGIMDH.EARRKHTGGKIL.FFF
RetrocopyALTTSAGIMDHKEARRKHTGGKILEFFF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 45 .56 RPM
SRP007412_cerebellum 0 .00 RPM 56 .77 RPM
SRP007412_heart 0 .03 RPM 48 .53 RPM
SRP007412_kidney 0 .04 RPM 183 .39 RPM
SRP007412_liver 0 .00 RPM 220 .31 RPM
SRP007412_testis 0 .00 RPM 121 .21 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1599 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1599 has 1 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_2556

Parental genes homology:
Parental genes homology involve 21 parental genes, and 288 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG0000001108318 retrocopies
Bos taurus ENSBTAG000000207335 retrocopies
Callithrix jacchus ENSCJAG000000200716 retrocopies
Cavia porcellus ENSCPOG0000002169512 retrocopies
Dasypus novemcinctus ENSDNOG0000000834145 retrocopies
Dipodomys ordii ENSDORG000000015575 retrocopies
Equus caballus ENSECAG000000192932 retrocopies
Homo sapiens ENSG0000013441937 retrocopies
Gorilla gorilla ENSGGOG00000026299 32 retrocopies
Gadus morhua ENSGMOG000000058621 retrocopy
Latimeria chalumnae ENSLACG000000114761 retrocopy
Loxodonta africana ENSLAFG0000002699613 retrocopies
Microcebus murinus ENSMICG0000001224120 retrocopies
Macaca mulatta ENSMMUG000000055933 retrocopies
Oryctolagus cuniculus ENSOCUG0000000017925 retrocopies
Otolemur garnettii ENSOGAG0000001319914 retrocopies
Pongo abelii ENSPPYG000000071392 retrocopies
Pan troglodytes ENSPTRG000000078232 retrocopies
Pteropus vampyrus ENSPVAG0000000290114 retrocopies
Rattus norvegicus ENSRNOG000000183205 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000002522226 retrocopies



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