RetrogeneDB ID: | retro_itri_927 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393345.1:7770230..7770533(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSSTOG00000025222 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 61.17 % |
Parental protein coverage: | 77.69 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | NVLADALKSINNAEKRG-KRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIV-VNLTGRLNKC |
NVL..ALKS...AE.R..K..VLIRPCS.V.V.FL.VM..HGY.G.FEI.DDHRAGKI.....TG..... | |
Retrocopy | NVLVGALKSSDDAEQRR<KYWVLIRPCSHVTVGFLNVMVHHGYTGAFEITDDHRAGKIL>TSQTG*TSME |
Parental | GVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLT |
.V.SPRFDVQLK.LEKW..NLLPS.QF....L. | |
Retrocopy | QVTSPRFDVQLKGLEKWLRNLLPSHQFDCMALS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |