RetrogeneDB ID: | retro_cpor_557 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_19:29162828..29163099(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSCPOG00000021695 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 55.91 % |
Parental protein coverage: | 70.77 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQ-NNLLPSRQF |
.KVI...LTVM.KHGYI..FEII..HRAGKIV.N.TG.LNK.GVISP.FD..L...E....N.L...... | |
Retrocopy | TKVIMQPLTVMLKHGYISDFEIIKGHRAGKIV-NFTGWLNKWGVISPKFDAELNEPENTE>NPLPSHQSY |
Parental | GFIVLTTSAGIMDHEEARRKHTG |
.....T.SAGIMDH.EA..K..G | |
Retrocopy | VLVLTT-SAGIMDHKEAK*KQKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 59 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 116 .52 RPM |
SRP017611_liver | 0 .00 RPM | 81 .96 RPM |
SRP040447_lung | 0 .00 RPM | 209 .71 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 193 .63 RPM |