RetrogeneDB ID: | retro_ocun_1157 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 3:15406568..15406770(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSOCUG00000000179 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 58.82 % |
Parental protein coverage: | 51.54 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RPCSKVIVRFLTVMMKHGYIGEFEIIDDHR-AGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLL |
R.....I..FL..MMKHGY....EI.D.HR..GK...NLTG.LNK.G.ISPR.DV.LKDLE..QN.LL | |
Retrocopy | RHSASPIAQFLIAMMKHGYTDKSEITDEHR>SGKLLLNLTGMLNKSGLISPR*DVHLKDLERRQNSLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 93 .49 RPM |
SRP017611_kidney | 0 .20 RPM | 242 .24 RPM |
SRP017611_liver | 0 .00 RPM | 47 .71 RPM |