RetrogeneDB ID: | retro_itri_1493 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393509.1:1286475..1286789(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSSTOG00000025222 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 71.7 % |
Parental protein coverage: | 80.77 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLL |
.LIR.CSK.IV.FLTVMMKHGY.GEFEI.DDHRAGKIVVNLTG.LNKCGVISPRFDVQLKDLEK.QNNLL | |
Retrocopy | MLIRWCSKAIVQFLTVMMKHGYVGEFEITDDHRAGKIVVNLTGSLNKCGVISPRFDVQLKDLEK*QNNLL |
Parental | PSRQF-GFIVLTTSAGIMDHEEARRKHTGGKILGFF |
.S.Q...FIVL..SA.IMDH.E............F. | |
Retrocopy | SSHQL<DFIVLPISADIMDHKEDKNTQEEKSLDSFY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |