Parental gene:

RPS15A, ENSDNOG00000008341

Aliases:None
Description:ribosomal protein S15a [Source:HGNC Symbol;Acc:10389]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_3091:59146..63420(-)


>ENSDNOG00000008341
ATGGTGCGCATGAACGTCCTGGCTGATGCCCTTAAGAGCATCAACAATGCTGAGAAGAGAGGCAAACGCCAGGTTCTTAT
CAGGCCGTGCTCCAAAGTCATCGTCAGGTTTCTAACTGTGATGATGAAGCATGGTTACATTGGCGAGTTTGAAATCATTG
ATGATCACAGAGCTGGAAAAATTGTTGTGAACCTCACAGGGAGGTTAAACAAGTGTGGGGTGATTAGTCCCAGATTTGAT
GTGCAACTCAAAGATCTAGAAAAATGGCAGAATAATTTGCTCCCATCCCGTCAGTTTGGTTTCATTGTATTGACGACCTC
AGCTGGCATCATGGACCACGAGGAAGCAAGGCGAAAACACACAGGAGGAAAAATCCTGGGATTCTTTTTCTAG

Library Parental gene expression (RPM)
SRP012922_ascending_colon 146 .24 RPM
SRP012922_cerebellum 57 .32 RPM
SRP012922_heart 78 .19 RPM
SRP012922_kidney 165 .10 RPM
SRP012922_liver 76 .32 RPM
SRP012922_lung 224 .05 RPM
SRP012922_quadricep_muscle 94 .16 RPM
SRP012922_spleen 232 .70 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011083 ortholog_one2one 18 retrogenes
retro_amel_106, retro_amel_123, retro_amel_1489, retro_amel_1572, retro_amel_1575, retro_amel_1708, retro_amel_1770, retro_amel_1894, retro_amel_245, retro_amel_271, retro_amel_319, retro_amel_438, retro_amel_442, retro_amel_603, retro_amel_648, retro_amel_66, retro_amel_766, retro_amel_96,
Bos taurus ENSBTAG00000020733 possible_ortholog 5 retrogenes
retro_btau_14, retro_btau_171, retro_btau_3, retro_btau_57, retro_btau_98,
Callithrix jacchus ENSCJAG00000020071 ortholog_one2many 6 retrogenes
retro_cjac_120, retro_cjac_128, retro_cjac_170, retro_cjac_231, retro_cjac_359, retro_cjac_80,
Cavia porcellus ENSCPOG00000021695 ortholog_one2one 12 retrogenes
retro_cpor_1031, retro_cpor_1087, retro_cpor_1103, retro_cpor_1334, retro_cpor_146, retro_cpor_403, retro_cpor_515, retro_cpor_557, retro_cpor_636, retro_cpor_730, retro_cpor_90, retro_cpor_926,
Dipodomys ordii ENSDORG00000001557 ortholog_one2one 5 retrogenes
retro_dord_165, retro_dord_455, retro_dord_496, retro_dord_51, retro_dord_582,
Equus caballus ENSECAG00000019293 ortholog_one2one 2 retrogenes
retro_ecab_114, retro_ecab_485,
Homo sapiens ENSG00000134419 ortholog_one2one 37 retrogenes
retro_hsap_1057, retro_hsap_1335, retro_hsap_1411, retro_hsap_1425, retro_hsap_164, retro_hsap_1695, retro_hsap_1769, retro_hsap_1932, retro_hsap_2020, retro_hsap_2087, retro_hsap_2117, retro_hsap_212, retro_hsap_2181, retro_hsap_2459, retro_hsap_2556, retro_hsap_2586, retro_hsap_3044, retro_hsap_3409, retro_hsap_3456, retro_hsap_351, retro_hsap_3514, retro_hsap_3539, retro_hsap_3590, retro_hsap_370, retro_hsap_374, retro_hsap_3904, retro_hsap_3987, retro_hsap_4033, retro_hsap_4071, retro_hsap_4300, retro_hsap_4802, retro_hsap_509, retro_hsap_629, retro_hsap_636, retro_hsap_685, retro_hsap_727, retro_hsap_861,
Gorilla gorilla ENSGGOG00000026299 ortholog_one2one 32 retrogenes
retro_ggor_109, retro_ggor_1270, retro_ggor_1406, retro_ggor_1532, retro_ggor_1599, retro_ggor_1619, retro_ggor_1631, retro_ggor_1642, retro_ggor_1728, retro_ggor_2242, retro_ggor_2332, retro_ggor_2376, retro_ggor_2390, retro_ggor_248, retro_ggor_2631, retro_ggor_2706, retro_ggor_283, retro_ggor_2874, retro_ggor_2989, retro_ggor_3075, retro_ggor_340, retro_ggor_365, retro_ggor_384, retro_ggor_466, retro_ggor_469, retro_ggor_551, retro_ggor_557, retro_ggor_558, retro_ggor_588, retro_ggor_614, retro_ggor_835, retro_ggor_85,
Gadus morhua ENSGMOG00000005862 ortholog_one2many 1 retrogene
retro_gmor_16,
Latimeria chalumnae ENSLACG00000011476 ortholog_one2one 1 retrogene
retro_lcha_55,
Loxodonta africana ENSLAFG00000026996 ortholog_one2one 13 retrogenes
retro_lafr_1161, retro_lafr_1201, retro_lafr_210, retro_lafr_236, retro_lafr_247, retro_lafr_309, retro_lafr_323, retro_lafr_356, retro_lafr_571, retro_lafr_613, retro_lafr_629, retro_lafr_759, retro_lafr_956,
Microcebus murinus ENSMICG00000012241 ortholog_one2one 20 retrogenes
retro_mmur_1007, retro_mmur_1051, retro_mmur_1112, retro_mmur_113, retro_mmur_1256, retro_mmur_1459, retro_mmur_1536, retro_mmur_185, retro_mmur_239, retro_mmur_250, retro_mmur_261, retro_mmur_297, retro_mmur_319, retro_mmur_486, retro_mmur_536, retro_mmur_570, retro_mmur_587, retro_mmur_772, retro_mmur_788, retro_mmur_984,
Macaca mulatta ENSMMUG00000005593 ortholog_one2one 3 retrogenes
retro_mmul_112, retro_mmul_293, retro_mmul_486,
Oryctolagus cuniculus ENSOCUG00000000179 ortholog_one2one 25 retrogenes
retro_ocun_1018, retro_ocun_1067, retro_ocun_1078, retro_ocun_1154, retro_ocun_1157, retro_ocun_1168, retro_ocun_1181, retro_ocun_1310, retro_ocun_1343, retro_ocun_1384, retro_ocun_1435, retro_ocun_144, retro_ocun_1600, retro_ocun_239, retro_ocun_253, retro_ocun_540, retro_ocun_559, retro_ocun_581, retro_ocun_587, retro_ocun_594, retro_ocun_634, retro_ocun_748, retro_ocun_780, retro_ocun_806, retro_ocun_92,
Otolemur garnettii ENSOGAG00000013199 ortholog_one2one 14 retrogenes
retro_ogar_102, retro_ogar_1254, retro_ogar_1302, retro_ogar_1361, retro_ogar_1636, retro_ogar_2241, retro_ogar_2361, retro_ogar_269, retro_ogar_2775, retro_ogar_3283, retro_ogar_3367, retro_ogar_563, retro_ogar_712, retro_ogar_87,
Pongo abelii ENSPPYG00000007139 ortholog_one2one 2 retrogenes
retro_pabe_2008, retro_pabe_34,
Pan troglodytes ENSPTRG00000007823 ortholog_one2one 2 retrogenes
retro_ptro_289, retro_ptro_76,
Pteropus vampyrus ENSPVAG00000002901 ortholog_one2one 14 retrogenes
retro_pvam_102, retro_pvam_1132, retro_pvam_1238, retro_pvam_1341, retro_pvam_344, retro_pvam_362, retro_pvam_364, retro_pvam_381, retro_pvam_383, retro_pvam_494, retro_pvam_50, retro_pvam_573, retro_pvam_834, retro_pvam_943,
Rattus norvegicus ENSRNOG00000018320 possible_ortholog 5 retrogenes
retro_rnor_1808, retro_rnor_2080, retro_rnor_2586, retro_rnor_324, retro_rnor_378,
Ictidomys tridecemlineatus ENSSTOG00000025222 ortholog_one2one 26 retrogenes
retro_itri_1013, retro_itri_1037, retro_itri_1092, retro_itri_1103, retro_itri_1213, retro_itri_1297, retro_itri_1407, retro_itri_1493, retro_itri_1504, retro_itri_1516, retro_itri_1726, retro_itri_205, retro_itri_255, retro_itri_443, retro_itri_452, retro_itri_475, retro_itri_491, retro_itri_498, retro_itri_536, retro_itri_624, retro_itri_692, retro_itri_716, retro_itri_829, retro_itri_839, retro_itri_844, retro_itri_927,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_87 77.69 99.23
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2. retro_dnov_147 78.95 100.00
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3. retro_dnov_462 80.90 66.15
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4. retro_dnov_494 85.71 86.15
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5. retro_dnov_505 84.73 100.00
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6. retro_dnov_629 62.63 73.08
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7. retro_dnov_653 89.23 100.00
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8. retro_dnov_667 70.00 53.85
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9. retro_dnov_686 71.19 90.00
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10. retro_dnov_774 77.32 73.85
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11. retro_dnov_785 80.36 84.62
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12. retro_dnov_1029 75.56 68.46
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13. retro_dnov_1031 92.56 93.08
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14. retro_dnov_1053 68.52 80.77
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15. retro_dnov_1060 70.64 82.31
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16. retro_dnov_1079 63.16 86.15
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17. retro_dnov_1197 100.00 100.00
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18. retro_dnov_1246 74.75 74.62
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19. retro_dnov_1598 90.99 84.62
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20. retro_dnov_1738 81.82 92.31
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21. retro_dnov_1766 66.06 82.31
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22. retro_dnov_1794 64.22 80.77
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23. retro_dnov_1954 64.71 52.31
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24. retro_dnov_1963 68.52 80.77
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25. retro_dnov_2002 66.06 82.31
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26. retro_dnov_2012 73.28 100.00
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27. retro_dnov_2047 81.55 77.69
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28. retro_dnov_2119 68.66 50.77
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29. retro_dnov_2155 76.06 54.62
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30. retro_dnov_2182 66.97 82.31
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31. retro_dnov_2206 72.09 65.38
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32. retro_dnov_2326 83.08 100.00
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33. retro_dnov_2338 67.86 64.62
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34. retro_dnov_2355 71.83 52.31
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35. retro_dnov_2401 84.73 97.69
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36. retro_dnov_2437 64.71 52.31
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37. retro_dnov_2458 68.04 73.08
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38. retro_dnov_2478 68.66 50.77
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39. retro_dnov_2479 71.03 80.77
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40. retro_dnov_2492 70.75 80.00
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41. retro_dnov_2516 64.49 81.54
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42. retro_dnov_2519 84.73 100.00
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43. retro_dnov_2655 64.60 85.38
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44. retro_dnov_2669 86.61 97.69
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45. retro_dnov_2689 71.62 56.15
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Download FASTA sequences of all ENSDNOG00000008341 retrocopies