RetrogeneDB ID: | retro_ocun_144 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 9:47705965..47706358(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000023430 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSOCUG00000000179 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 85.83 % |
Parental protein coverage: | 97.69 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCG |
MN.LADAL.SIN.AEK.GK.Q..IRPCS.VIV.FLTVMMK.GYIGEFEIID.HRAGKIVVNLTGRLNKCG | |
Retrocopy | MNALADALESINKAEKIGKCQIFIRPCSNVIVSFLTVMMKQGYIGEFEIIDHHRAGKIVVNLTGRLNKCG |
Parental | VISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF |
VISPRFDVQLKDLEKWQNNLLPS.QFGF.VLTTSA.IMDHE.A..KHTG.KILGFFF | |
Retrocopy | VISPRFDVQLKDLEKWQNNLLPSHQFGFTVLTTSAAIMDHEKAQQKHTGEKILGFFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 93 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 242 .24 RPM |
SRP017611_liver | 0 .00 RPM | 47 .71 RPM |