RetrogeneDB ID: | retro_itri_1092 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393374.1:3238615..3239008(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSSTOG00000025222 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 85.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLN |
MV.MNVLAD.LKSINNAEKR.K.QVLIR..SKVIV.FLTV.MKHGYIGEFEI.DDHRAGKIVVN.TG.LN | |
Retrocopy | MVCMNVLADGLKSINNAEKRSKHQVLIRLFSKVIVLFLTVLMKHGYIGEFEITDDHRAGKIVVNITGWLN |
Parental | KCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGG-KILGFFF |
KC.VISPRFDVQLKDLEKWQ.NLLPS.QFGFIVLTTS..IMDH.EAR.KHTGG.KILGFFF | |
Retrocopy | KCEVISPRFDVQLKDLEKWQKNLLPSHQFGFIVLTTSSCIMDHKEAR*KHTGGRKILGFFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |