RetrogeneDB ID: | retro_dnov_686 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | GeneScaffold_801:431978..432328(-) | ||
Located in intron of: | ENSDNOG00000003884 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSDNOG00000008341 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 71.19 % |
Parental protein coverage: | 90. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCG |
MNVLA..LKSI.NAEKRGK.QVLIRP.SKVIV.FLT.MM..G.IG.FEI.D.HR..KIVV.LT.RLNKCG | |
Retrocopy | MNVLAHTLKSISNAEKRGKHQVLIRPGSKVIV*FLTGMMIQGCIGQFEITDHHRPEKIVVTLTSRLNKCG |
Parental | VISPR-FDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKH |
...P..F.VQL.D.E.WQNNLLP..QF.F..LTTSAGI.DH.EAR.KH | |
Retrocopy | TTHPH<FNVQLRD*EEWQNNLLPFCQFSFNELTTSAGIRDHAEARGKH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 146 .24 RPM |
SRP012922_cerebellum | 0 .00 RPM | 57 .32 RPM |
SRP012922_heart | 0 .00 RPM | 78 .19 RPM |
SRP012922_kidney | 0 .00 RPM | 165 .10 RPM |
SRP012922_liver | 0 .00 RPM | 76 .32 RPM |
SRP012922_lung | 0 .00 RPM | 224 .05 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 94 .16 RPM |
SRP012922_spleen | 0 .00 RPM | 232 .70 RPM |