RetrogeneDB ID: | retro_ocun_1018 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 19:18665009..18665332(-) | ||
Located in intron of: | ENSOCUG00000015730 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSOCUG00000000179 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 78.18 % |
Parental protein coverage: | 83.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKW-Q |
K.QVLIR..S.VI.RFLT..MKHGYIG.FEII.DHRAG.IVVNLT.RLNKCGVISPRFD.QLKDLEK..Q | |
Retrocopy | KCQVLIRLSSRVIFRFLTMVMKHGYIGKFEIIGDHRAGEIVVNLTSRLNKCGVISPRFDMQLKDLEKG<Q |
Parental | NNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF |
NN..PS.QFGFIVL.TSAGIMDH...R.KH.GGKIL.FFF | |
Retrocopy | NNVVPSHQFGFIVL-TSAGIMDHKDTRQKHIGGKILVFFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 93 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 242 .24 RPM |
SRP017611_liver | 0 .00 RPM | 47 .71 RPM |