RetrogeneDB ID: | retro_itri_839 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393331.1:8944183..8944566(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS15A | ||
Ensembl ID: | ENSSTOG00000025222 | ||
Aliases: | None | ||
Description: | ribosomal protein S15a [Source:HGNC Symbol;Acc:10389] |
Percent Identity: | 58.14 % |
Parental protein coverage: | 96.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NVLADALKSINNAEKRGKRQVLIRPCSKVIVRFL-TVMMKHGYIGEFEIIDDHRAGKIVVNLTG--RLNK |
NVLADALKSINN..KR...QV..R.CS.V...F..TV.M.HGYI.EFE..DDHR........TG....N. | |
Retrocopy | NVLADALKSINNVKKRSRCQVIFRLCSRVLPHFP<TVTMEHGYISEFETTDDHRDIVVTLTGTG*HSSNR |
Parental | CGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF |
CGV.S.R..V.LKDLEK..NNLLPSR.....VLTT...IMDH......HTGGK.LGFFF | |
Retrocopy | CGVVSLRINVELKDLEKG*NNLLPSRSLAGPVLTTPTVIMDHXXXKMRHTGGKTLGFFF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |