RetrogeneDB ID: | retro_ecab_275 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 12:10759956..10760325(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS23 | ||
Ensembl ID: | ENSECAG00000020523 | ||
Aliases: | None | ||
Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
Percent Identity: | 78.86 % |
Parental protein coverage: | 86.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVR |
GKCRGL.T.RKL.S...DQKWHD.QY.K.HLG..LKANPF.GASHAKGIVLEK...EAK.PN.A..K.VR | |
Retrocopy | GKCRGLHTVRKLCSP*QDQKWHDEQYRKTHLGPTLKANPFRGASHAKGIVLEKIWLEAKHPNFATQKRVR |
Parental | VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVK |
VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAG.G.KGHAVG.IPG..FKVV. | |
Retrocopy | VQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGRGHKGHAVGAIPGGLFKVVR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .06 RPM | 767 .27 RPM |
SRP021940_cerebellum | 0 .00 RPM | 257 .84 RPM |
SRP021940_embryo | 0 .05 RPM | 343 .21 RPM |
SRP021940_placental_villous | 0 .00 RPM | 357 .80 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 393 .53 RPM |
SRP021940_testis | 0 .00 RPM | 153 .72 RPM |