Parental gene: | RPS23, ENSEEUG00000001849 |
| Aliases: | None |
| Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
| Organism: | Hedgehog (Erinaceus europaeus) |
| Coordinates: | scaffold_221045:78..1243(+) |
>ENSEEUG00000001849
GGCAAGTGTCGTGGTCTCCGTACTGCCAGGAAGCTGCGTAGCCACCGGCGGGACCAGAAGTGGCATGATAAGCAGTACAA
GAAAGCCCATCTGGGCACAGCCCTGAAGGCCAATCCTTTTGGAGGTGCTTCCCATGCCAAGGGGATTGTGCTGGAAAAAG
TAGGAGTTGAAGCCAAACAGCCAAATTCTGCTATCAGGAAGTGTGTCCGAGTTCAGCTGATCAAGAATGGCAAGAAAATC
ACAGCCTTTGTGCCCAATGATGGTTGCTTGAATTTCATTGAGGAAAACGATGAAGTTCTGGTTGCTGGATTTGGTCGTAA
AGGTCACGCTGTTGGTGACATTCCTGGAGTCCGGTTTAAGGTCGTCAAAGTGGCTAATGTCTCTCTCTTGGCTTTATACA
AAGGCAAGAAGGAAAGGCCAAGGTCCTAA
GGCAAGTGTCGTGGTCTCCGTACTGCCAGGAAGCTGCGTAGCCACCGGCGGGACCAGAAGTGGCATGATAAGCAGTACAA
GAAAGCCCATCTGGGCACAGCCCTGAAGGCCAATCCTTTTGGAGGTGCTTCCCATGCCAAGGGGATTGTGCTGGAAAAAG
TAGGAGTTGAAGCCAAACAGCCAAATTCTGCTATCAGGAAGTGTGTCCGAGTTCAGCTGATCAAGAATGGCAAGAAAATC
ACAGCCTTTGTGCCCAATGATGGTTGCTTGAATTTCATTGAGGAAAACGATGAAGTTCTGGTTGCTGGATTTGGTCGTAA
AGGTCACGCTGTTGGTGACATTCCTGGAGTCCGGTTTAAGGTCGTCAAAGTGGCTAATGTCTCTCTCTTGGCTTTATACA
AAGGCAAGAAGGAAAGGCCAAGGTCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 110 .94 RPM |
| SRP017611_kidney | 157 .53 RPM |
| SRP017611_brain | 55 .92 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000011136 | ortholog_one2one | 1 retrogene | |
| Ailuropoda melanoleuca | ENSAMEG00000015966 | ortholog_one2one | 3 retrogenes | |
| Bos taurus | ENSBTAG00000013358 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000011247 | possible_ortholog | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000022705 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000020523 | ortholog_one2one | 2 retrogenes | |
| Felis catus | ENSFCAG00000008839 | ortholog_one2one | 7 retrogenes | |
| Loxodonta africana | ENSLAFG00000031506 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000013964 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000013939 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000003578 | possible_ortholog | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000010363 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000008163 | ortholog_one2one | 11 retrogenes | |
| Pan troglodytes | ENSPTRG00000017052 | ortholog_one2one | 6 retrogenes | |
| Rattus norvegicus | ENSRNOG00000016580 | ortholog_one2one | 12 retrogenes | |
| Sorex araneus | ENSSARG00000008904 | ortholog_one2one | 8 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000008347 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000000824 | ortholog_one2one | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000011385 | ortholog_one2one | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000014491 | ortholog_one2one | 6 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_eeur_53 | 84.25 | 89.44 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_eeur_102 | 78.77 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_eeur_262 | 55.91 | 86.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_eeur_326 | 54.55 | 60.56 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_eeur_462 | 93.28 | 83.80 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_eeur_515 | 89.51 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_eeur_662 | 92.54 | 92.96 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSEEUG00000001849 retrocopies