RetrogeneDB ID: | retro_eeur_326 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_255299:2239..2501(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS23 | ||
Ensembl ID: | ENSEEUG00000001849 | ||
Aliases: | None | ||
Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
Percent Identity: | 54.55 % |
Parental protein coverage: | 60.56 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITA-FVPNDGCLNF-IEENDEVLVAGFG |
NP.G..S.AK.IVLEK..V..K..NSAIR.CVR.QLIKNG..ITA..V..DG.LNF......E.L..G.G | |
Retrocopy | NPEGTISPAKRIVLEKGRVDVKKANSAIRTCVRAQLIKNGREITA>LVHPDGGLNFG*RDMMEILLVGCG |
Parental | RKGHAVGDIPGVRFKVVK |
..GHAVG..PG....V.. | |
Retrocopy | HRGHAVGEGPGSLLSVAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 157 .53 RPM |
SRP017611_liver | 0 .00 RPM | 110 .94 RPM |