Parental gene: | RPS23, ENSPTRG00000017052 |
| Aliases: | None |
| Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 5:33141953..33145027(+) |
>ENSPTRG00000017052
ATGGGCAAGTGTCGTGGACTTCGTACTGCTAGGAAGCTCCGTAGTCACCGACGAGACCAGAAGTGGCATGATAAACAGTA
TAAGAAAGCTCATTTGGGCACAGCCCTAAAGGCCAACCCTTTTGGAGGTGCTTCTCATGCAAAAGGAATCGTGCTGGAAA
AAGTAGGAGTTGAAGCCAAACAGCCAAATTCTGCCATTAGGAAGTGTGTAAGGGTCCAGCTGATCAAGAATGGCAAGAAA
ATCACAGCCTTTGTACCCAACGACGGCTGCTTGAACTTTATTGAGGAAAATGATGAAGTTCTGGTTGCTGGATTTGGTCG
CAAAGGTCATGCCGTTGGTGATATTCCTGGAGTCCGCTTTAAGTTTCATGGATACAGTGTCATGGTTGAAATGAAGCTGT
GA
ATGGGCAAGTGTCGTGGACTTCGTACTGCTAGGAAGCTCCGTAGTCACCGACGAGACCAGAAGTGGCATGATAAACAGTA
TAAGAAAGCTCATTTGGGCACAGCCCTAAAGGCCAACCCTTTTGGAGGTGCTTCTCATGCAAAAGGAATCGTGCTGGAAA
AAGTAGGAGTTGAAGCCAAACAGCCAAATTCTGCCATTAGGAAGTGTGTAAGGGTCCAGCTGATCAAGAATGGCAAGAAA
ATCACAGCCTTTGTACCCAACGACGGCTGCTTGAACTTTATTGAGGAAAATGATGAAGTTCTGGTTGCTGGATTTGGTCG
CAAAGGTCATGCCGTTGGTGATATTCCTGGAGTCCGCTTTAAGTTTCATGGATACAGTGTCATGGTTGAAATGAAGCTGT
GA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 121 .96 RPM |
| SRP007412_cerebellum | 116 .40 RPM |
| SRP007412_heart | 97 .00 RPM |
| SRP007412_kidney | 199 .75 RPM |
| SRP007412_liver | 137 .68 RPM |
| SRP007412_testis | 64 .39 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000011136 | ortholog_one2one | 1 retrogene | |
| Ailuropoda melanoleuca | ENSAMEG00000015966 | ortholog_one2one | 3 retrogenes | |
| Bos taurus | ENSBTAG00000013358 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000011247 | possible_ortholog | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000022705 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000020523 | ortholog_one2one | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000001849 | ortholog_one2one | 7 retrogenes | |
| Felis catus | ENSFCAG00000008839 | ortholog_one2one | 7 retrogenes | |
| Loxodonta africana | ENSLAFG00000031506 | ortholog_one2one | 3 retrogenes | |
| Microcebus murinus | ENSMICG00000013964 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000013939 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000003578 | possible_ortholog | 4 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000010363 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000008163 | ortholog_one2one | 11 retrogenes | |
| Rattus norvegicus | ENSRNOG00000016580 | ortholog_one2one | 12 retrogenes | |
| Sorex araneus | ENSSARG00000008904 | ortholog_one2one | 8 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000008347 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000000824 | ortholog_one2one | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000011385 | ortholog_one2one | 5 retrogenes | |
| Tursiops truncatus | ENSTTRG00000014491 | ortholog_one2one | 6 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1190 | 82.61 | 83.46 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2056 | 68.03 | 90.98 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2223 | 68.42 | 82.71 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2707 | 84.30 | 90.98 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_3075 | 96.69 | 90.98 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_3122 | 96.55 | 65.41 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000017052 retrocopies