RetrogeneDB ID: | retro_ptro_2056 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 4:63494623..63494984(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS23 | ||
Ensembl ID: | ENSPTRG00000017052 | ||
Aliases: | None | ||
Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
Percent Identity: | 68.03 % |
Parental protein coverage: | 90.98 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCV |
M.K..GL.T.RKL.SH..D.K.H.KQY.....GTALKAN.F.GAS.AKGI.LEKV.VEAKQPNSA.RKC. | |
Retrocopy | MSKGPGLHTVRKLCSH**DKKCH-KQYREVYVGTALKANSFKGASNAKGIMLEKVEVEAKQPNSAFRKCF |
Parental | RVQLIKNGKKITAFV-PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK |
RVQLIKN.KKIT..V.PNDGCLN.IEEN..VLV..F..K.HA..DIPG..FK | |
Retrocopy | RVQLIKNSKKITSVV>PNDGCLNIIEENN*VLVREFD*KDHAIIDIPGIHFK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 121 .96 RPM |
SRP007412_cerebellum | 0 .00 RPM | 116 .40 RPM |
SRP007412_heart | 0 .00 RPM | 97 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 199 .75 RPM |
SRP007412_liver | 0 .00 RPM | 137 .68 RPM |
SRP007412_testis | 0 .00 RPM | 64 .39 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2940 |
Gorilla gorilla | retro_ggor_2038 |
Pongo abelii | retro_pabe_2515 |