RetrogeneDB ID: | retro_eeur_102 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_630:39155..39583(+) | ||
Located in intron of: | ENSEEUG00000008393 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS23 | ||
Ensembl ID: | ENSEEUG00000001849 | ||
Aliases: | None | ||
Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
Percent Identity: | 78.77 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | GKCRGLRTARKLRSHRRDQKWHDKQ-YKKAHLGTALKANP-FGGASHAKGIVLEKVGVEAKQPNSAIRKC |
GKCRGL.TA.KLR....DQKW.DKQ..KKA.LG.ALKA.P.FGGASHAKGI.L.KVGVEAKQPN.A.RKC | |
Retrocopy | GKCRGLCTASKLRGYQWDQKWYDKQ<VKKASLGMALKASP>FGGASHAKGIMLKKVGVEAKQPNPAVRKC |
Parental | VRVQLIKNGKK-ITAFVPNDG-CLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGK |
V..QLIKNGKK.ITAFVPNDG..LNFIEENDEVLVA.FGR..HAVGDI.GV.FKVV.VA.VSLLALYKGK | |
Retrocopy | V*IQLIKNGKK>ITAFVPNDG>TLNFIEENDEVLVAVFGRNIHAVGDILGVCFKVVEVASVSLLALYKGK |
Parental | KERPRS |
K.R.RS | |
Retrocopy | KGRSRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .32 RPM | 55 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 157 .53 RPM |
SRP017611_liver | 0 .00 RPM | 110 .94 RPM |