RetrogeneDB ID: | retro_eeur_53 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | GeneScaffold_2827:208749..209130(-) | ||
Located in intron of: | ENSEEUG00000012187 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS23 | ||
Ensembl ID: | ENSEEUG00000001849 | ||
Aliases: | None | ||
Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
Percent Identity: | 84.25 % |
Parental protein coverage: | 89.44 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | CRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ |
C.GL...RKLRSHR.DQKWHDKQYKKA.LGTALKANPFGG.SHAKGI.LEKVGVEAK...SAIRKCV.VQ | |
Retrocopy | CCGLCNVRKLRSHR*DQKWHDKQYKKAYLGTALKANPFGGTSHAKGIMLEKVGVEAK*SDSAIRKCVPVQ |
Parental | LIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSL |
LIKNGKKIT.FVPNDGCLNFIEENDEVL.AGFG.KGHAVGDIP.V.FKVVKVA..S. | |
Retrocopy | LIKNGKKITGFVPNDGCLNFIEENDEVLAAGFGHKGHAVGDIPEVPFKVVKVASLSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .92 RPM |
SRP017611_kidney | 0 .19 RPM | 157 .53 RPM |
SRP017611_liver | 0 .00 RPM | 110 .94 RPM |