RetrogeneDB ID: | retro_eeur_462 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_313200:9181..9538(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS23 | ||
Ensembl ID: | ENSEEUG00000001849 | ||
Aliases: | None | ||
Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
Percent Identity: | 93.28 % |
Parental protein coverage: | 83.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFI |
KQYKKA.LGTALKANPFGGASHAKGIVL.KVGV.AKQPNSAIRKC...QLIKNGKKI.AFVPNDGCLNFI | |
Retrocopy | KQYKKAYLGTALKANPFGGASHAKGIVL*KVGVKAKQPNSAIRKCIQIQLIKNGKKIIAFVPNDGCLNFI |
Parental | EENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS |
EENDEVLVAGFG.KGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS | |
Retrocopy | EENDEVLVAGFGHKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 157 .53 RPM |
SRP017611_liver | 0 .00 RPM | 110 .94 RPM |