RetrogeneDB ID: | retro_ggor_1138 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 15:21039019..21039321(+) | ||
Located in intron of: | ENSGGOG00000010835 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSGGOG00000014520 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.3 % |
Parental protein coverage: | 54.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | EKNSSQSEEDDIERRKEVESILKKNSDWIWDWSSRPENIPPKEFLF-KHPKRTATLSMRNTSVMKKGGIF |
EKNSSQSEED..E.RKEVESILKKNSDWIWDW.S.PENIP.KEFLF.KH.K..AT.........K.G.IF | |
Retrocopy | EKNSSQSEEDT-EKRKEVESILKKNSDWIWDWTSWPENIPHKEFLF>KHLKHVATQHGI*SLMRKGG-IF |
Parental | SAEFLK-VFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
SAEF.K.V.LPS....HL.A.GLGIYIGR.LTTSTSTF | |
Retrocopy | SAEFPK>VLLPS----HLVAMGLGIYIGRHLTTSTSTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 80 .80 RPM |
SRP007412_cerebellum | 0 .16 RPM | 47 .83 RPM |
SRP007412_heart | 0 .06 RPM | 29 .05 RPM |
SRP007412_kidney | 0 .12 RPM | 89 .71 RPM |
SRP007412_liver | 0 .11 RPM | 84 .57 RPM |
SRP007412_testis | 0 .10 RPM | 59 .05 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1486 |
Pan troglodytes | retro_ptro_1005 |