RetrogeneDB ID: | retro_ggor_2521 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 7:62050986..62051359(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSGGOG00000014520 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.81 % |
Parental protein coverage: | 65.46 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | CDSPPRSQTPQDTNRASETDTHSIGEKNSSQSEEDD-IERRKEVESILKKNSDWIWDWSSRPENIPPKEF |
CDSPP.SQTP.D.N.AS.T.T.SI.EKN.S...E.....R.K......K.N...I...SS.PENI....F | |
Retrocopy | CDSPPHSQTPWDSNGASKTKTKSIQEKN-SSHSEKN>VLREKQLKASFK-NTG*I*V*SSQPENILLINF |
Parental | LFKHPKRTATLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTTS |
.FKHP..TATLSMRN.S.MKKG..FSAEF.K..LPSLLLS.LLAI...IY.G..LT.S | |
Retrocopy | -FKHPNCTATLSMRNVSIMKKGVVFSAEFYKDSLPSLLLSLLLAIK*EIYNGIHLTIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 80 .80 RPM |
SRP007412_cerebellum | 0 .00 RPM | 47 .83 RPM |
SRP007412_heart | 0 .00 RPM | 29 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 89 .71 RPM |
SRP007412_liver | 0 .00 RPM | 84 .57 RPM |
SRP007412_testis | 0 .00 RPM | 59 .05 RPM |