RetrogeneDB ID:

retro_nleu_2923

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397486.1:1070123..1070511(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:BNIP3
Ensembl ID:ENSNLEG00000001613
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2923
ATGGAAAATATACTGCTGGATTTCCAGCATACATCCAGATAGAGATAGCTCCAAGAGTTCTCACTGTGACAGCCCACATC
TTTCACAGACATTATGGGATACTAATAGGGCTTCTAAAACAGATACACAAAGCATTCAAAAGAAAAACAGCTCTCACTCT
GAGAAAGATTATATTGAGAGAAACAAAGAAGTTAAAAGCATCTTAAGAAAAAACTGAAATTAGATATAAGATTGATCAAG
TCAGCCAGAAAACATTCCTCCAAAAACAATTTCTCTCAAAATACCCAAAGTGCATAGCTACTCAGCATGAGAAACAAGTA
CTATGAAGAAAAGACGTATATTATCATAAGGCAGAATCATAAAATATTTTTTTCTATCTCTGCTGCTA

ORF - retro_nleu_2923 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 57.58 %
Parental protein coverage: 84.87 %
Number of stop codons detected: 5
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalMEKILLDAQHES-GRSSSKSSHCDSPPRSQTPQDTNRVSETDTHSIGEKNSSQSEEDDIERRKEVESILK
ME.ILLD.QH.S..R.SSKSSHCDSP..SQT..DTNR.S.TDT.SI..KNSS.SE.D.IER.KEV.SIL.
RetrocopyMENILLDFQHTS>DRDSSKSSHCDSPHLSQTLWDTNRASKTDTQSIQKKNSSHSEKDYIERNKEVKSILR
ParentalKNSDWIWDWSSRPENIPP-KEFLFKHPKRTATLSMR-NTSVMKKGGIFSAEFLKVFLPSLLL
KN...I.D.SS.PENIPP.K.FL.K.PK..AT..........K..........K.F..SLLL
RetrocopyKN*N*I*D*SSQPENIPP>KQFLSKYPKCIATQHEK<TSTMKKRRILS*GRIIKYFFLSLLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_2923 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 146 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000021502 retrocopies
Callithrix jacchus ENSCJAG000000002288 retrocopies
Cavia porcellus ENSCPOG000000058827 retrocopies
Dipodomys ordii ENSDORG000000125111 retrocopy
Equus caballus ENSECAG000000174583 retrocopies
Echinops telfairi ENSETEG000000117041 retrocopy
Homo sapiens ENSG0000017617121 retrocopies
Gorilla gorilla ENSGGOG0000001452017 retrocopies
Microcebus murinus ENSMICG000000119851 retrocopy
Macaca mulatta ENSMMUG0000002244513 retrocopies
Mus musculus ENSMUSG000000785664 retrocopies
Nomascus leucogenys ENSNLEG00000001613 26 retrocopies
Pongo abelii ENSPPYG0000000277118 retrocopies
Pan troglodytes ENSPTRG0000000306717 retrocopies
Rattus norvegicus ENSRNOG000000172433 retrocopies
Sus scrofa ENSSSCG000000243881 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000124561 retrocopy
Tupaia belangeri ENSTBEG000000004871 retrocopy
Tursiops truncatus ENSTTRG000000080381 retrocopy



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