RetrogeneDB ID: | retro_itri_299 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393283.1:7947862..7948378(+) | ||
Located in intron of: | ENSSTOG00000007895 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSSTOG00000012456 | ||
Aliases: | None | ||
Description: | BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084] |
Percent Identity: | 52.78 % |
Parental protein coverage: | 90.16 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | ELHFSN-GNGSGVPASVSIYNGDMEKILLDAQHESGR-SSSKSSHCDS-PPRSQTPQENTRASETDAHSI |
ELHFSN.GNGS....SV..YN.DMEKIL..AQHESG..SSSKSS.....P.....P....RASETD..SI | |
Retrocopy | ELHFSNNGNGSSASVSVFVYNDDMEKILPGAQHESGM>SSSKSSQ*ET>PSHL*APLDTNRASETDTLSI |
Parental | GEKNSSQSEEDYLERRKEVESILKKNSDWIWDWSSRP-ENIPP-KEFLFRHPKRTATLSMRNTSVMKKGG |
.E..SSQS..D....R.....ILKKN.D.I...SS....NI.P.KEFL....K.T.TLSMRNT....K.. | |
Retrocopy | RENSSSQSKKDVIKERS--WKILKKNLD*ING*SSHL>KNISP>KEFLLKYQKYTSTLSMRNTTLKRKEH |
Parental | IFSAEFLKVFLPSLLLSHLLAIGLGI-YIGRRLTTSTSTF |
....E..K.F..SLLL...LAIG.G..Y..R..T.STSTF | |
Retrocopy | LL-GEISKGF-SSLLLFPPLAIGPGT<YVRRHITASTSTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |