RetrogeneDB ID: | retro_mmul_1394 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 19:22107934..22108317(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSMMUG00000022445 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.69 % |
Parental protein coverage: | 64.95 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | ELHFSNNGNGSSVPASVSIYNGDMEKI-LLDAQHES-GRSSSKSSHCDSPPRSQTPQDTNRASETDTHSI |
ELH...NGNGSS..ASVSIYNGD.....LLD.QHES..R..SK.S.CD.P..S..P.DTNRASETDT.S. | |
Retrocopy | ELHLHSNGNGSSISASVSIYNGDXXXXXLLDFQHES>DRDNSKNSPCDNPSHS*RPWDTNRASETDTQST |
Parental | GEKNSSQSEEDDIERRKEVESILKKNSDWIWDWSSRPENIPP-KEFLFKHPKRTATLSM |
GEKNSSQSE.D.IER.........KNSD...D.....E..PP.KEF..KH...TATLSM | |
Retrocopy | GEKNSSQSEQDYIERKNKLKASSRKNSD*M*D*QTWSEDSPP>KEFFTKHSECTATLSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 105 .10 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 103 .13 RPM |
SRP007412_cerebellum | 0 .00 RPM | 53 .92 RPM |
SRP007412_heart | 0 .00 RPM | 70 .43 RPM |
SRP007412_kidney | 0 .00 RPM | 71 .59 RPM |
SRP007412_liver | 0 .00 RPM | 63 .06 RPM |
SRP007412_testis | 0 .04 RPM | 6 .56 RPM |