RetrogeneDB ID: | retro_mmus_1195 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:44596664..44597225(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000072594 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Bnip3 | ||
Ensembl ID: | ENSMUSG00000078566 | ||
Aliases: | Bnip3, Nip3 | ||
Description: | BCL2/adenovirus E1B interacting protein 3 [Source:MGI Symbol;Acc:MGI:109326] |
Percent Identity: | 97.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSQSGEENLQGSWVELHFSNGNGSSVPASVSIYNGDMEKILLDAQHESGRSSSKSSHCDSPPRSQTPQDT |
MSQSGEENLQGSWVELHFSNGNGSSVPAS..IYNGDMEKILLDAQHESGRSSSKSSHCDSPPRSQTPQDT | |
Retrocopy | MSQSGEENLQGSWVELHFSNGNGSSVPASIFIYNGDMEKILLDAQHESGRSSSKSSHCDSPPRSQTPQDT |
Parental | NRAEIDSHSFGEKNSTLSEEDYIERRREVESILKKNSDWIWDWSSRPENIPPKEFLFKHPKRTATLSMRN |
NRAE.DSHSFGEKNSTLSEEDYIERRREVESILKKNSDWIWDWSSRPENIPPKEFLFKHPKRTAT.SMRN | |
Retrocopy | NRAERDSHSFGEKNSTLSEEDYIERRREVESILKKNSDWIWDWSSRPENIPPKEFLFKHPKRTATFSMRN |
Parental | TSVMKKGGIFSADFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
TSVMKKGGIFSADFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF | |
Retrocopy | TSVMKKGGIFSADFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .09 RPM | 33 .78 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .54 RPM |
SRP007412_heart | 0 .03 RPM | 34 .27 RPM |
SRP007412_kidney | 0 .19 RPM | 47 .76 RPM |
SRP007412_liver | 0 .25 RPM | 76 .08 RPM |
SRP007412_testis | 0 .00 RPM | 3 .61 RPM |