RetrogeneDB ID: | retro_mmus_2207 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 3:144727883..144728447(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Bnip3 | ||
Ensembl ID: | ENSMUSG00000078566 | ||
Aliases: | Bnip3, Nip3 | ||
Description: | BCL2/adenovirus E1B interacting protein 3 [Source:MGI Symbol;Acc:MGI:109326] |
Percent Identity: | 81.05 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MSQSGEENLQGSWVELHFSNGNGSSVPASVSIYNGDMEKILLDAQHESGRSSSKSSHCDSPPRSQTPQDT |
MSQSGEENLQGSWVELHFSN.NGSSVPAS.SIYNGDMEKILLDAQHESGRSSSKSSHCDSPP.SQT.QDT | |
Retrocopy | MSQSGEENLQGSWVELHFSNSNGSSVPASISIYNGDMEKILLDAQHESGRSSSKSSHCDSPPCSQTSQDT |
Parental | NRAEIDSHSFGEKNSTLSEEDYIER-RR-EVESILKKNSDWIWDWSSRPENI-PPKEFLFKHPKRTATLS |
NRAE.D..........L.....I.R.RR.EVESILKKNSD.IW.WSSRPENI..PKEFLFKHPK.T.TL. | |
Retrocopy | NRAERDTPTAMARKTALCLRKIILR<RRREVESILKKNSD*IWGWSSRPENI>TPKEFLFKHPKCTSTLI |
Parental | MRNTSVMKKGGIFSADFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
MRNTS.MKKGGIFSADFLKVFLP..LLSHLLAIGLG.YIGRRLTTS..TF | |
Retrocopy | MRNTSIMKKGGIFSADFLKVFLPFQLLSHLLAIGLGTYIGRRLTTSIGTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .05 RPM | 33 .78 RPM |
SRP007412_cerebellum | 0 .17 RPM | 19 .54 RPM |
SRP007412_heart | 0 .00 RPM | 34 .27 RPM |
SRP007412_kidney | 0 .06 RPM | 47 .76 RPM |
SRP007412_liver | 0 .00 RPM | 76 .08 RPM |
SRP007412_testis | 0 .09 RPM | 3 .61 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_93135 | 355 libraries | 318 libraries | 293 libraries | 69 libraries | 37 libraries |