RetrogeneDB ID: | retro_mmul_1369 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 19:20875866..20876336(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSMMUG00000022445 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.6 % |
Parental protein coverage: | 80.93 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | QEESLQGSWVELHFSNNGNGSSVPASVSIYNGDMEKILLDAQHESGR-SSSKSSHCDSPPRSQTPQDTNR |
.EESLQ.SWVELH..NNGNGSSV.ASVSIY.GDMEK.LLD.QHESG...S.KSSHCDSPP.S.TP.DTNR | |
Retrocopy | EEESLQASWVELHLHNNGNGSSVSASVSIYSGDMEKTLLDFQHESGQ>DSFKSSHCDSPPHSHTPWDTNR |
Parental | ASETDTHSIGEKNSSQSEEDDIER-RKEVESILKKN-SDWIWDWSSRPENIPP-KEFLFKHP-KRTATLS |
ASE.DT.S.GEKNSS.SE.D.IER........L.KN.SD.I.D.SS.PENIP..KEFL.KHP.K.TATLS | |
Retrocopy | ASEIDTQSNGEKNSSPSE*DYIER<KNKLNASLEKN<SD*IKDLSSSPENIPL>KEFLSKHP<KYTATLS |
Parental | MRNTSVMKKGGIFSAEFLKVFL |
M.N.S.MK.GGIFSAEF.KV.L | |
Retrocopy | MTNMSIMKTGGIFSAEFYKVSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 105 .10 RPM |
SRP007412_brain_prefrontal_cortex | 0 .16 RPM | 103 .13 RPM |
SRP007412_cerebellum | 0 .06 RPM | 53 .92 RPM |
SRP007412_heart | 0 .00 RPM | 70 .43 RPM |
SRP007412_kidney | 0 .00 RPM | 71 .59 RPM |
SRP007412_liver | 0 .00 RPM | 63 .06 RPM |
SRP007412_testis | 0 .00 RPM | 6 .56 RPM |