RetrogeneDB ID: | retro_mmus_3577 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:13490500..13490796(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081597 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Bnip3 | ||
Ensembl ID: | ENSMUSG00000078566 | ||
Aliases: | Bnip3, Nip3 | ||
Description: | BCL2/adenovirus E1B interacting protein 3 [Source:MGI Symbol;Acc:MGI:109326] |
Percent Identity: | 89.11 % |
Parental protein coverage: | 53.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SEEDYIERRREVESILKKNSDWIWDWSSRP-ENIPPKEFLFKHPKRTATLSMRNTSVMKKGGIFSADFLK |
SE.DYIERR.EVESILKK.SDWIWD.SSR..ENIPPKE.LFKH.KRTATLSMRNTSVMKKGGIFSA.FLK | |
Retrocopy | SEKDYIERR-EVESILKKESDWIWD*SSRQ<ENIPPKELLFKHLKRTATLSMRNTSVMKKGGIFSAEFLK |
Parental | VFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
VFLPSLLLSHLLAIGLG.YIGR.LTTSTSTF | |
Retrocopy | VFLPSLLLSHLLAIGLGTYIGRCLTTSTSTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 33 .78 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .54 RPM |
SRP007412_heart | 0 .06 RPM | 34 .27 RPM |
SRP007412_kidney | 0 .00 RPM | 47 .76 RPM |
SRP007412_liver | 0 .03 RPM | 76 .08 RPM |
SRP007412_testis | 0 .05 RPM | 3 .61 RPM |