RetrogeneDB ID: | retro_pabe_3122 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:22941647..22942232(-) | ||
Located in intron of: | ENSPPYG00000017535 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSPPYG00000002771 | ||
Aliases: | None | ||
Description: | BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084] |
Percent Identity: | 55. % |
Parental protein coverage: | 75.78 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | SPSGAMSQNGAPGMQEESLQGSWVELHFSNNGNGSSVPASVSIYNGDMEKILLDAQHESGRSSSKSSHCD |
S...A..Q...P..QEESLQ.SWV..H..NN.NG..V..SVSIYNGDME..L.D.QHES.........CD | |
Retrocopy | SSTPAPHQRAKPELQEESLQASWVGMHLHNNENGNNVLGSVSIYNGDMENVLRDFQHESVKR*LQEFQCD |
Parental | SPPRSQT--DTNRASETDTHSIGE-NSSQSEEDDIER-RKEVESILKKNSDWIWDWSSRPENIPPKEFLF |
SPP.S.T......ASETDT.SIGE.N.SQS..D.IER..K.V..IL.KNSD...D..S.P.......... | |
Retrocopy | SPPHSRTL*NAKMASETDTQSIGEKNISQSQKDYIER<KK*VKCILRKNSDYM*D*RSQPXXXXXXXXXX |
Parental | KHPKR-TATLSMRNTSVMKK-GGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTS |
..PK..T..LSMRN.S.MKK.G.IFSAEF.K...PSLLLSHLLAI..G..IG...TTSTS | |
Retrocopy | XXPKL<TQLLSMRNMSIMKK<GSIFSAEFYKI-PPSLLLSHLLAIERGDSIGIHQTTSTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 63 .25 RPM |
SRP007412_cerebellum | 0 .00 RPM | 53 .50 RPM |
SRP007412_heart | 0 .00 RPM | 45 .73 RPM |
SRP007412_kidney | 0 .00 RPM | 35 .00 RPM |
SRP007412_liver | 0 .06 RPM | 31 .00 RPM |