RetrogeneDB ID: | retro_pabe_1666 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 19:21792334..21792896(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSPPYG00000002771 | ||
Aliases: | None | ||
Description: | BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084] |
Percent Identity: | 64.58 % |
Parental protein coverage: | 72.27 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | PGMQEESLQGSWVELHFSNNGNGSSVPASVSIYNGDM-EKILLDAQHES-GRSSSKSSHCDSPPRSQT-- |
P..QEESLQ.SWVELH..N.GNG.SV.ASV.IYNGDM.EKILLD.Q.ES.GR..SKS..CDSPP.S.T.. | |
Retrocopy | PELQEESLQASWVELHLHNKGNGRSVSASVPIYNGDM<EKILLDLQYES>GRDHSKSHPCDSPPHSKTPW |
Parental | DTNRASETDTHSIGE-NSSQ-SEEDDIERRKEVESI-LKKNSDWIWDWSSRPENIPPKEFLFKHPKRTAT |
D...AS.TDT.SI.E.NS.Q..E.D.IER.KEV.SI.LKKNS.............P.KEFL.KHP..TAT | |
Retrocopy | DMHKASKTDTQSI*EKNSFQ<NEQDFIERNKEVKSI<LKKNSN*TKIYRNSQKIFP*KEFLSKHPECTAT |
Parental | LSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
L.MRN.S..KK..IFSAEF.KV.L.SLLLSHLLAI..GIY....LTTSTSTF | |
Retrocopy | LRMRNVSIIKKLCIFSAEFHKVSLSSLLLSHLLAIEWGIYVEIHLTTSTSTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 63 .25 RPM |
SRP007412_cerebellum | 0 .00 RPM | 53 .50 RPM |
SRP007412_heart | 0 .00 RPM | 45 .73 RPM |
SRP007412_kidney | 0 .00 RPM | 35 .00 RPM |
SRP007412_liver | 0 .00 RPM | 31 .00 RPM |