RetrogeneDB ID: | retro_pabe_1688 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 19_random:91950..92416(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSPPYG00000002771 | ||
Aliases: | None | ||
Description: | BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084] |
Percent Identity: | 60. % |
Parental protein coverage: | 60.55 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | QNGAPGMQEESLQGSWVELHFSNNGNGSSVPASVSIYNGDMEKILLDAQHESGRSSSKSSHCDSPPRSQT |
Q...P..QEESLQ.SWVELH..NN..GSSV.ASV.IYNG.M.KILLD......R.SS.SSHCDSP..SQT | |
Retrocopy | QTVKPEQQEESLQTSWVELHLHNNRKGSSVSASVFIYNGGMKKILLDFSMSPDRDSSESSHCDSPRLSQT |
Parental | --DTNRASETDTHSIGE-NSSQSEEDDIERRKEVESILKKNSDWIWDWSSRPENIPPK-EFLFKHPKRTA |
..DTNRASETDT..I.E..SS...E.D.E..K.V.S.L.KN.D.I....S.....P.K.EFL.KHPK..A | |
Retrocopy | PRDTNRASETDTQCITE>KSSSHSEKDSE--KKVKSVLRKN*DQI*LIKSVRKYFPKK<EFLSKHPKCIA |
Parental | TLSMRNTSV-MKKGGIFSAE |
TLS.RN.S....KGGIFSAE | |
Retrocopy | TLSKRNMSI>LNKGGIFSAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 63 .25 RPM |
SRP007412_cerebellum | 0 .00 RPM | 53 .50 RPM |
SRP007412_heart | 0 .00 RPM | 45 .73 RPM |
SRP007412_kidney | 0 .00 RPM | 35 .00 RPM |
SRP007412_liver | 0 .00 RPM | 31 .00 RPM |