RetrogeneDB ID: | retro_mmul_1392 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 19:21357075..21357518(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSMMUG00000022445 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.89 % |
Parental protein coverage: | 76.29 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | LLDAQHESG-RSSSKSSHCDSPPRSQTPQDTNRASETDTHSIGEKNSSQ-SEEDDIERRKEVESIL-KKN |
LLD.Q.ESG.R..SK...CDSPP.S..P.DT..AS.TDT.SI.EKNSSQ..E.D.IER.KEV.SIL.KKN | |
Retrocopy | LLDLQYESG>RDHSKTHRCDSPPHSKIPWDTHKASKTDTQSI*EKNSSQ<NEQDYIERNKEVKSIL<KKN |
Parental | SDWIWDWSSRPENIPPKEFLFKHPKRTATLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYI |
S....D.S..PENIP.K.FL.KHP..TATLSMRNTS..KK.GIFSAEF.KV.L.SLLLSHLL....GIY. | |
Retrocopy | SN*TQDLSK*PENIPLKQFLSKHPECTATLSMRNTSIIKKVGIFSAEFHKVSLSSLLLSHLLDFEWGIYV |
Parental | GRRLTTSTSTF |
...LTTSTSTF | |
Retrocopy | EIHLTTSTSTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 105 .10 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 103 .13 RPM |
SRP007412_cerebellum | 0 .00 RPM | 53 .92 RPM |
SRP007412_heart | 0 .00 RPM | 70 .43 RPM |
SRP007412_kidney | 0 .00 RPM | 71 .59 RPM |
SRP007412_liver | 0 .00 RPM | 63 .06 RPM |
SRP007412_testis | 0 .00 RPM | 6 .56 RPM |