RetrogeneDB ID: | retro_ggor_1475 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 19:24324588..24324939(-) | ||
Located in intron of: | ENSGGOG00000026880 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSGGOG00000014520 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.87 % |
Parental protein coverage: | 61.86 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | DTNRASETDTHSIGEKNSSQSEEDD-IERRKEVESILKKNS-DWIWDWSSRPENIPP-KEFLFKHPKRTA |
DTNR.S.TD..SI..KN.S.....D.I.R.KEV.S..KK...D.I.D.SS..ENIP..KEFL.K.PK..A | |
Retrocopy | DTNRVSKTDIQSIQKKN-SSHSKKD>ILRKKEVKSLFKKPE<D*I*DCSSQSENIPL>KEFLSKYPKCIA |
Parental | TLSMRNTSVMKKGGIFSAEF-LKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
TLSM.N.S.MKKGGI.S.EF.LKVF...L...H.LAI...IYI...LTTSTSTF | |
Retrocopy | TLSMSNMSTMKKGGILSVEF<LKVFI-HLCCAH-LAIEGKIYIEIYLTTSTSTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 80 .80 RPM |
SRP007412_cerebellum | 0 .00 RPM | 47 .83 RPM |
SRP007412_heart | 0 .00 RPM | 29 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 89 .71 RPM |
SRP007412_liver | 0 .08 RPM | 84 .57 RPM |
SRP007412_testis | 0 .00 RPM | 59 .05 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2046 |