RetrogeneDB ID: | retro_pabe_3050 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:22903531..22903923(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSPPYG00000002771 | ||
Aliases: | None | ||
Description: | BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084] |
Percent Identity: | 65.22 % |
Parental protein coverage: | 50.39 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 7 |
Parental | GDM-EKILLDAQHES-GRSSSKSSHCDSPPRSQT--DTNRASE-TDTHSIG-ENSSQSEEDDIERRK-EV |
GDM.EKILLD.Q..S..R.SSK..H.DSPP.S.T..D.NRASE.T.T.SIG....S...E.D....K.EV | |
Retrocopy | GDM<EKILLDFQDKS>DRDSSKGFHYDSPPHS*TPWDINRASE>TETQSIG<KKNSSQSEQDYIEKK<EV |
Parental | ESIL-KKNSDWIWDWSSRPENIPPKE-FLFKHPKRTATLSMRNTSVMKKGGIFSAEFLKVFLPSLLLS |
.SIL..KNSD.I.D.SS.PENIP..E.FL.KH.K.TATLSMRN.SVMKKGGIFSAEF.KV.LPSL.LS | |
Retrocopy | KSIL<LKNSD*I*D*SSLPENIPLNE>FLSKHSKCTATLSMRNMSVMKKGGIFSAEFRKVSLPSLGLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 63 .25 RPM |
SRP007412_cerebellum | 0 .00 RPM | 53 .50 RPM |
SRP007412_heart | 0 .00 RPM | 45 .73 RPM |
SRP007412_kidney | 0 .00 RPM | 35 .00 RPM |
SRP007412_liver | 0 .00 RPM | 31 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2629 |