RetrogeneDB ID: | retro_ggor_1433 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 19:20436396..20436784(+) | ||
Located in intron of: | ENSGGOG00000023756 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSGGOG00000014520 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.36 % |
Parental protein coverage: | 66.49 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | SPPRSQTPQDT-NRASETDTHSIGEKNSSQSEEDDIERRKEVESILKKNSDWIWDWSSRPENI-PPKEFL |
SP.......DT.N..S...T..IGEKNS..S.ED.I.R.KE.ESILK..SD.I.DW.S..E.I.PP..FL | |
Retrocopy | SP*QPTSLTDTRNQQSF*NTQGIGEKNSY*SVEDYIDRKKEIESILKEYSD*IRDWLSEQEKI>PPM-FL |
Parental | FKHPKRTATLSMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
FK.PK.TATLSMRNT...K...IF..EFL.VFLPSLLLSHLLAIGLGIYIG..LTTST..F | |
Retrocopy | FKEPKCTATLSMRNTRILKNRYIFYPEFL*VFLPSLLLSHLLAIGLGIYIGSHLTTSTGIF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 80 .80 RPM |
SRP007412_cerebellum | 0 .08 RPM | 47 .83 RPM |
SRP007412_heart | 0 .00 RPM | 29 .05 RPM |
SRP007412_kidney | 0 .08 RPM | 89 .71 RPM |
SRP007412_liver | 0 .00 RPM | 84 .57 RPM |
SRP007412_testis | 0 .21 RPM | 59 .05 RPM |