RetrogeneDB ID: | retro_hsap_1979 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 19:20462535..20462886(+) | ||
Located in intron of: | ENSG00000231205 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000271704 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSG00000176171 | ||
Aliases: | None | ||
Description: | BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084] |
Percent Identity: | 59.17 % |
Parental protein coverage: | 60.82 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | NRASETDTHSIGEKNSSQSEEDDIERRKE-VESILKKNSDWIWDWSSRPENIPPKE-FLFKHPKRTATLS |
N.ASET.T.S.GEKN.S.S.E.D...RK..V..IL.K.SD.I.......ENIP.KE.FL.KH.K.TATL. | |
Retrocopy | NKASETETQSTGEKNRSPS-EQDGSERKK<VKMILRKISDYI*H*LCQIENIPLKE>FLSKHLKCTATLN |
Parental | MRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
MRN.S.MKKGG.FS.EF.KV...SLL.SHLLAI..G.Y....LTTS..TF | |
Retrocopy | MRNMSIMKKGGRFSEEFYKVSFLSLLFSHLLAIEWGFYVEIYLTTSNNTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 44 .33 RPM |
bodymap2_adrenal | 0 .00 RPM | 10 .87 RPM |
bodymap2_brain | 0 .00 RPM | 89 .99 RPM |
bodymap2_breast | 0 .00 RPM | 50 .86 RPM |
bodymap2_colon | 0 .00 RPM | 54 .80 RPM |
bodymap2_heart | 0 .00 RPM | 96 .75 RPM |
bodymap2_kidney | 0 .00 RPM | 59 .73 RPM |
bodymap2_liver | 0 .00 RPM | 85 .68 RPM |
bodymap2_lung | 0 .00 RPM | 21 .48 RPM |
bodymap2_lymph_node | 0 .00 RPM | 28 .96 RPM |
bodymap2_ovary | 0 .04 RPM | 28 .72 RPM |
bodymap2_prostate | 0 .00 RPM | 40 .91 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 162 .78 RPM |
bodymap2_testis | 0 .00 RPM | 41 .48 RPM |
bodymap2_thyroid | 0 .00 RPM | 42 .54 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 10 .81 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .04 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |