RetrogeneDB ID: | retro_pabe_1665 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 19:21131834..21132391(-) | ||
Located in intron of: | ENSPPYG00000009785 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3 | ||
Ensembl ID: | ENSPPYG00000002771 | ||
Aliases: | None | ||
Description: | BCL2/adenovirus E1B 19kDa interacting protein 3 [Source:HGNC Symbol;Acc:1084] |
Percent Identity: | 60.21 % |
Parental protein coverage: | 72.27 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | PGMQEESLQGSWVELHFSNNGNGSSVPASVSIYNGDME-KILLDAQHESGRSSSKSSHCDSPPRSQ--TD |
P..QEE....SWVEL...NNGNGS.V.ASVS.YN.D...KILLD.Q....R..SKSSHCD.PP.S....D | |
Retrocopy | PELQEEIP*ASWVELCLHNNGNGSGVSASVSSYNCDIK<KILLDFQGK--RRCSKSSHCDNPPNSHKPQD |
Parental | TNRASETDTHSIGE-NSSQSEEDDIERRKEVESILKK-NSDWIWDWSSRPENIPP-KEFLFKHPKRTATL |
.NR.SE.DT.SI.E.NSS.S..D..E.........KK.NSD.I.D.SSRPENIP..KEFL.KHPK.TA.. | |
Retrocopy | INRPSEMDTQSIREKNSSPSQQDSSENKVS*KHLKKK<NSD*IQD*SSRPENIPL>KEFL*KHPKCTAIV |
Parental | SMRNTSVMKKGGIFSAEFLKVFLPSLLLSHLLAIGLGIYIGRRLTTSTSTF |
SMRNTS.MKK.GIFS.EF.KVFL..LLLS..LAI..GIY.....TTST..F | |
Retrocopy | SMRNTSIMKKKGIFSVEFHKVFLSCLLLSYFLAIEWGIYFEIHVTTSTRAF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 63 .25 RPM |
SRP007412_cerebellum | 0 .00 RPM | 53 .50 RPM |
SRP007412_heart | 0 .03 RPM | 45 .73 RPM |
SRP007412_kidney | 0 .00 RPM | 35 .00 RPM |
SRP007412_liver | 0 .03 RPM | 31 .00 RPM |