RetrogeneDB ID:

retro_ggor_2599

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:7:61722144..61722599(-)
Located in intron of:ENSGGOG00000015983
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:BNIP3
Ensembl ID:ENSGGOG00000014520
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2599
GGTGACATGAAAAAATACTGCTGGATTTCCAAGACAAGTCCAGATAGAGATAGCTCCAAGGGTTTTCACTATGATAGCCC
ACCTCATTCATAGACACCATGGGATATTAATAGGGCTTCTGAAACAGAAACCCAAAGCATTGGAAGAAAAACAGCTCTCA
GTCTGAGCAAGATTATATTGAGAAAAAGAAGTTAAAAGCATTCTTTAAAAAACTCAGATTAGATATAAGATTGATCAAGT
TTACCAGAAAATATTCCCCTAAACGAAATTTCTTTCTAAACACTCAAAGTGCACAGCTACTCTCAGCATGAGAAACATGA
GTGTTATGAAGAAAGGGGGCATATTCTCAGCAGAATTTAGTAAGGTTTCTCTCCCATCTCTGGGGCTCTCATCTCCTAGC
CATTGAATAGGGGATTTATATTGAAATACATCTGACAATTTCCATCAGCACTTTT

ORF - retro_ggor_2599 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 62.73 %
Parental protein coverage: 79.38 %
Number of stop codons detected: 5
Number of frameshifts detected 7


Retrocopy - Parental Gene Alignment:

ParentalGDM-EKILLDAQHES-GRSSSKSSHCDSPPRSQTPQDTNRASETDTHSIG-EKNSSQSEEDDIERRK-EV
GDM.EKILLD.Q..S..R.SSK..H.DSPP.S.TP.D.NRASET.T.SIG..KNSSQS.E.D....K.EV
RetrocopyGDM<EKILLDFQDKS>DRDSSKGFHYDSPPHS*TPWDINRASETETQSIG<KKNSSQS-EQDYIEKK<EV
ParentalESIL-KKNSDWIWDWSSRPENIPPKE-FLFKHPKRTATLSMRNTSVM-KKGGIFSAEFLKVFLPSLLLSH
.SIL..KNSD.I.D.SS.PENIP..E.FL.KH.K.TATLSMRN.SVM..KG...S...L..FL..L..SH
RetrocopyKSIL<LKNSD*I*D*SSLPENIPLNE>FLSKHSKCTATLSMRNMSVM>RKGA-YSQQNLVRFLSHLWGSH
ParentalLLAIGLGIYIGRRLTTSTSTF
LLAI..GIYI...LT.S.STF
RetrocopyLLAIE*GIYIEIHLTISISTF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 80 .80 RPM
SRP007412_cerebellum 0 .00 RPM 47 .83 RPM
SRP007412_heart 0 .00 RPM 29 .05 RPM
SRP007412_kidney 0 .00 RPM 89 .71 RPM
SRP007412_liver 0 .03 RPM 84 .57 RPM
SRP007412_testis 0 .00 RPM 59 .05 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2599 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2599 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 19 parental genes, and 146 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000021502 retrocopies
Callithrix jacchus ENSCJAG000000002288 retrocopies
Cavia porcellus ENSCPOG000000058827 retrocopies
Dipodomys ordii ENSDORG000000125111 retrocopy
Equus caballus ENSECAG000000174583 retrocopies
Echinops telfairi ENSETEG000000117041 retrocopy
Homo sapiens ENSG0000017617121 retrocopies
Gorilla gorilla ENSGGOG00000014520 17 retrocopies
Microcebus murinus ENSMICG000000119851 retrocopy
Macaca mulatta ENSMMUG0000002244513 retrocopies
Mus musculus ENSMUSG000000785664 retrocopies
Nomascus leucogenys ENSNLEG0000000161326 retrocopies
Pongo abelii ENSPPYG0000000277118 retrocopies
Pan troglodytes ENSPTRG0000000306717 retrocopies
Rattus norvegicus ENSRNOG000000172433 retrocopies
Sus scrofa ENSSSCG000000243881 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000124561 retrocopy
Tupaia belangeri ENSTBEG000000004871 retrocopy
Tursiops truncatus ENSTTRG000000080381 retrocopy



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